Index

C | E | F | G | S | U | V

C

checkGenesInDB() (ENCODEQT.ENCODEQT method)

E

ENCODEQT (class in ENCODEQT)
(module)

F

fuzzyCellLineSearch() (ENCODEQT.ENCODEQT method)
fuzzyFactorSearch() (ENCODEQT.ENCODEQT method)

G

getAllFactorGenes() (ENCODEQT.ENCODEQT method)
getBackgroundList() (ENCODEQT.ENCODEQT method)
getCellLines() (ENCODEQT.ENCODEQT method)
getCountsByList() (ENCODEQT.ENCODEQT method)
getDownstream() (ENCODEQT.ENCODEQT method)
getElementType() (ENCODEQT.ENCODEQT method)
getFeatureType() (ENCODEQT.ENCODEQT method)
getListNames() (ENCODEQT.ENCODEQT method)
getOrganism() (ENCODEQT.ENCODEQT method)
getPriorQuery() (ENCODEQT.ENCODEQT method)
getSigGenesFromListForFactor() (ENCODEQT.ENCODEQT method)
getSignificanceScores() (ENCODEQT.ENCODEQT method)
getStatistics() (ENCODEQT.ENCODEQT method)
getSymbolList() (ENCODEQT.ENCODEQT method)
getSymbolType() (ENCODEQT.ENCODEQT method)
getTFsAndCellLines() (ENCODEQT.ENCODEQT method)
getTotalGenesAnalyzed() (ENCODEQT.ENCODEQT method)
getUpstream() (ENCODEQT.ENCODEQT method)

S

setBackgroundList() (ENCODEQT.ENCODEQT method)
setCellLines() (ENCODEQT.ENCODEQT method)
setDownstream() (ENCODEQT.ENCODEQT method)
setElementType() (ENCODEQT.ENCODEQT method)
setFeatureType() (ENCODEQT.ENCODEQT method)
setListNames() (ENCODEQT.ENCODEQT method)
setOrganism() (ENCODEQT.ENCODEQT method)
setPriorQuery() (ENCODEQT.ENCODEQT method)
setSymbolList() (ENCODEQT.ENCODEQT method)
setSymbolType() (ENCODEQT.ENCODEQT method)
setUpstream() (ENCODEQT.ENCODEQT method)
showCurrentState() (ENCODEQT.ENCODEQT method)

U

useSampleQuery() (ENCODEQT.ENCODEQT method)

V

validateAllGenesQuery() (ENCODEQT.ENCODEQT method)
validateCheckGeneInDBQuery() (ENCODEQT.ENCODEQT method)
validateOrganism() (ENCODEQT.ENCODEQT method)
validateQuery() (ENCODEQT.ENCODEQT method)
verifyCellLineInDB() (ENCODEQT.ENCODEQT method)
verifyFactorInDB() (ENCODEQT.ENCODEQT method)