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Module Hierarchy
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Class Hierarchy
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Class Hierarchy
ete2.clustering.stats.Dispatch
:
The Dispatch class, care of David Ascher, allows different functions to be called depending on the argument types.
ete2.phylo.evolevents.EvolEvent
:
Basic evolutionary event.
ete2.treeview.drawer.TreeImageProperties
object
:
The most base type
ete2.coretype.arraytable.ArrayTable
:
This object is thought to work with matrix datasets (like microarrays).
exceptions.BaseException
:
Common base class for all exceptions
exceptions.Exception
:
Common base class for all non-exit exceptions.
ete2.parser.newick.NewickError
:
Exception class designed for NewickIO errors.
ete2.coretype.tree.TreeError
:
Exception class designed for tree.
ete2.treeview.faces.Face
:
Standard definition of a face node object.
ete2.treeview.faces.ImgFace
:
Creates a new image face object.
ete2.treeview.faces.ProfileFace
:
Creates a new vector profile face object.
ete2.treeview.faces.SequenceFace
:
Creates a new molecular sequence face object.
ete2.treeview.faces.TextFace
:
Creates a new text face object.
ete2.treeview.faces.AttrFace
:
Creates a new text attribute face object.
ete2.treeview.faces.ValidationFace
:
Creates a new clustering validation face
ete2.phylomedb.phylomeDB.PhylomeDBConnector
:
Reuturns a connector to a phylomeDB database.
ete2.coretype.seqgroup.SeqGroup
:
SeqGroup class can be used to store a set of sequences (aligned or not).
ete2.coretype.tree.TreeNode
:
TreeNode (Tree) class is used to store a tree structure.
ete2.clustering.clustertree.ClusterNode
:
Creates a new Cluster Tree object, which is a collection of ClusterNode instances connected in a hierarchical way, and representing a clustering result.
ete2.phylo.phylotree.PhyloNode
:
Re-implementation of the standart TreeNode instance.
ete2.treeview._about.Ui_About
ete2.treeview._search_dialog.Ui_Dialog
ete2.treeview._mainwindow.Ui_MainWindow
ete2.treeview._show_newick.Ui_Newick
ete2.treeview._open_newick.Ui_OpenNewick
int
:
int(x[, base]) -> integer
PyQt4.QtGui.QGraphicsItem.CacheMode
PyQt4.QtGui.QGraphicsView.CacheModeFlag
PyQt4.QtGui.QDialog.DialogCode
PyQt4.QtGui.QMainWindow.DockOption
PyQt4.QtGui.QGraphicsView.DragMode
PyQt4.QtGui.QAbstractItemDelegate.EndEditHint
PyQt4.QtGui.QGraphicsItem.GraphicsItemChange
PyQt4.QtGui.QGraphicsItem.GraphicsItemFlag
PyQt4.QtGui.QGraphicsScene.ItemIndexMethod
PyQt4.QtGui.QGraphicsView.OptimizationFlag
PyQt4.QtGui.QPaintDevice.PaintDeviceMetric
PyQt4.QtGui.QWidget.RenderFlag
PyQt4.QtGui.QGraphicsScene.SceneLayer
PyQt4.QtGui.QFrame.Shadow
PyQt4.QtGui.QFrame.Shape
PyQt4.QtGui.QGraphicsPixmapItem.ShapeMode
PyQt4.QtGui.QFrame.StyleMask
PyQt4.QtGui.QGraphicsView.ViewportAnchor
PyQt4.QtGui.QGraphicsView.ViewportUpdateMode
sip.simplewrapper
PyQt4.QtGui.QGraphicsView.CacheMode
PyQt4.QtGui.QMainWindow.DockOptions
PyQt4.QtGui.QGraphicsItem.GraphicsItemFlags
PyQt4.QtGui.QGraphicsView.OptimizationFlags
PyQt4.QtGui.QPaintDevice
PyQt4.QtGui.QWidget
PyQt4.QtGui.QDialog
ete2.treeview.drawer.NewickDialog
PyQt4.QtGui.QFrame
PyQt4.QtGui.QAbstractScrollArea
PyQt4.QtGui.QGraphicsView
ete2.treeview.drawer._MainView
PyQt4.QtGui.QMainWindow
ete2.treeview.drawer._MainApp
ete2.treeview.drawer._PropModeChooser
ete2.treeview.drawer._PropertiesDialog
PyQt4.QtGui.QWidget.RenderFlags
PyQt4.QtGui.QGraphicsScene.SceneLayers
sip.wrapper
PyQt4.QtGui.QGraphicsItem
PyQt4.QtGui.QAbstractGraphicsShapeItem
PyQt4.QtGui.QGraphicsRectItem
ete2.treeview.drawer._HighlighterItem
ete2.treeview.drawer._NodeItem
ete2.treeview.drawer._SelectorItem
PyQt4.QtGui.QGraphicsSimpleTextItem
ete2.treeview.drawer._TextItem
:
Manage faces on Scene
PyQt4.QtGui.QGraphicsPixmapItem
ete2.treeview.drawer._FaceItem
:
Manage faces on Scene
PyQt4.QtCore.QObject
PyQt4.QtGui.QAbstractItemDelegate
PyQt4.QtGui.QItemDelegate
ete2.treeview.drawer._TableItem
PyQt4.QtGui.QGraphicsScene
ete2.treeview.drawer._TreeScene
PyQt4.QtGui.QWidget
PyQt4.QtGui.QDialog
ete2.treeview.drawer.NewickDialog
PyQt4.QtGui.QFrame
PyQt4.QtGui.QAbstractScrollArea
PyQt4.QtGui.QGraphicsView
ete2.treeview.drawer._MainView
PyQt4.QtGui.QMainWindow
ete2.treeview.drawer._MainApp
ete2.treeview.drawer._PropModeChooser
ete2.treeview.drawer._PropertiesDialog
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