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1 __VERSION__="ete2-2.0rev104" 2 # #START_LICENSE########################################################### 3 # 4 # Copyright (C) 2009 by Jaime Huerta Cepas. All rights reserved. 5 # email: jhcepas@gmail.com 6 # 7 # This file is part of the Environment for Tree Exploration program (ETE). 8 # http://ete.cgenomics.org 9 # 10 # ETE is free software: you can redistribute it and/or modify it 11 # under the terms of the GNU General Public License as published by 12 # the Free Software Foundation, either version 3 of the License, or 13 # (at your option) any later version. 14 # 15 # ETE is distributed in the hope that it will be useful, 16 # but WITHOUT ANY WARRANTY; without even the implied warranty of 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 18 # GNU General Public License for more details. 19 # 20 # You should have received a copy of the GNU General Public License 21 # along with ETE. If not, see <http://www.gnu.org/licenses/>. 22 # 23 # #END_LICENSE############################################################# 24 25 26 species_ages = {} 27 28 _humanv1 = { 29 # Basal eukariotes 30 "Ath":10, # Arabidopsis thaliana 31 "Cre":10, 32 "Pfa":10, 33 "Pyo":10, 34 "Ddi":10, 35 "Gth":10, 36 "Lma":10, # leismania 37 "Pte":10, 38 39 # Fungi 40 "Ago":9, 41 "Cal":9, 42 "Cgl":9, 43 "Cne":9, 44 "Dha":9, 45 "Ecu":9, 46 "Gze":9, 47 "Kla":9, 48 "Ncr":9, 49 "Sce":9, # S.cerevisiae 50 "Spb":9, 51 "Yli":9, 52 53 # metazoa non chordates 54 "Aga":8, # Anopheles 55 "Dme":8, # Drosophila melanogaster 56 "Ame":8, # Apis meliferae 57 "Cel":8, # Caenorabditis elegans 58 "Cbr":8, # Caenorabditis brigssae 59 60 # chordates non vertebrates 61 "Cin":7, # Ciona intestinalis 62 63 # vertebrates non tetrapodes 64 "Dre":6, # Danio rerio 65 "Tni":6, # Tetraodom 66 "Fru":6, # Fugu rubripes 67 68 # tetrapodes non birds nor mammals 69 "Xtr":5, # Xenopus 70 71 # birds 72 "Gga":4, # Chicken 73 74 # Mammals non primates 75 "Mdo":3, # Monodelphis domestica 76 "Mms":3, # Mouse 77 "Rno":3, # Rat 78 "Cfa":3, # Dog 79 "Bta":3, # Cow 80 81 # primates non hominids 82 "Ptr":2, # chimp 83 "Mmu":2, # Macaca 84 85 # hominids 86 "Hsa":1, # human 87 } 88 species_ages["human_phylome"] = _humanv1 89
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