Everything
All Classes
PyQt4.QtGui.QAbstractItemDelegate.EndEditHint
PyQt4.QtGui.QDialog.DialogCode
PyQt4.QtGui.QFrame.Shadow
PyQt4.QtGui.QFrame.Shape
PyQt4.QtGui.QFrame.StyleMask
PyQt4.QtGui.QGraphicsItem.CacheMode
PyQt4.QtGui.QGraphicsItem.GraphicsItemChange
PyQt4.QtGui.QGraphicsItem.GraphicsItemFlag
PyQt4.QtGui.QGraphicsItem.GraphicsItemFlags
PyQt4.QtGui.QGraphicsPixmapItem.ShapeMode
PyQt4.QtGui.QGraphicsScene.ItemIndexMethod
PyQt4.QtGui.QGraphicsScene.SceneLayer
PyQt4.QtGui.QGraphicsScene.SceneLayers
PyQt4.QtGui.QGraphicsView.CacheMode
PyQt4.QtGui.QGraphicsView.CacheModeFlag
PyQt4.QtGui.QGraphicsView.DragMode
PyQt4.QtGui.QGraphicsView.OptimizationFlag
PyQt4.QtGui.QGraphicsView.OptimizationFlags
PyQt4.QtGui.QGraphicsView.ViewportAnchor
PyQt4.QtGui.QGraphicsView.ViewportUpdateMode
PyQt4.QtGui.QMainWindow.DockOption
PyQt4.QtGui.QMainWindow.DockOptions
PyQt4.QtGui.QPaintDevice.PaintDeviceMetric
PyQt4.QtGui.QWidget.RenderFlag
PyQt4.QtGui.QWidget.RenderFlags
ete2.clustering.clustertree.ClusterNode
ete2.clustering.stats.Dispatch
ete2.coretype.arraytable.ArrayTable
ete2.coretype.seqgroup.SeqGroup
ete2.coretype.tree.TreeNode
ete2.phylo.evolevents.EvolEvent
ete2.phylo.phylotree.PhyloNode
ete2.phylomedb.phylomeDB.PhylomeDBConnector
ete2.treeview.drawer.TreeImageProperties
ete2.treeview.faces.AttrFace
ete2.treeview.faces.Face
ete2.treeview.faces.ImgFace
ete2.treeview.faces.ProfileFace
ete2.treeview.faces.SequenceFace
ete2.treeview.faces.TextFace
ete2.treeview.faces.ValidationFace
All Functions
ete2.clustering.clustvalidation.euclidean_dist
ete2.clustering.clustvalidation.get_avg_profile
ete2.clustering.clustvalidation.get_dunn_index
ete2.clustering.clustvalidation.get_silhouette_width
ete2.clustering.clustvalidation.pearson_dist
ete2.clustering.clustvalidation.safe_mean
ete2.clustering.clustvalidation.safe_mean_vector
ete2.clustering.clustvalidation.spearman_dist
ete2.clustering.clustvalidation.square_euclidean_dist
ete2.clustering.pstat.aabut
ete2.clustering.pstat.abut
ete2.clustering.pstat.acolex
ete2.clustering.pstat.acollapse
ete2.clustering.pstat.adm
ete2.clustering.pstat.aduplicates
ete2.clustering.pstat.alinexand
ete2.clustering.pstat.alinexor
ete2.clustering.pstat.arecode
ete2.clustering.pstat.areplace
ete2.clustering.pstat.arowcompare
ete2.clustering.pstat.arowsame
ete2.clustering.pstat.asortrows
ete2.clustering.pstat.aunique
ete2.clustering.pstat.colex
ete2.clustering.pstat.collapse
ete2.clustering.pstat.dm
ete2.clustering.pstat.duplicates
ete2.clustering.pstat.flat
ete2.clustering.pstat.isstring
ete2.clustering.pstat.linedelimited
ete2.clustering.pstat.lineincols
ete2.clustering.pstat.lineincustcols
ete2.clustering.pstat.linexand
ete2.clustering.pstat.linexor
ete2.clustering.pstat.list2string
ete2.clustering.pstat.makelol
ete2.clustering.pstat.makestr
ete2.clustering.pstat.nonrepeats
ete2.clustering.pstat.pl
ete2.clustering.pstat.printcc
ete2.clustering.pstat.printincols
ete2.clustering.pstat.printl
ete2.clustering.pstat.recode
ete2.clustering.pstat.remap
ete2.clustering.pstat.replace
ete2.clustering.pstat.roundlist
ete2.clustering.pstat.simpleabut
ete2.clustering.pstat.sortby
ete2.clustering.pstat.unique
ete2.clustering.stats.F_value_multivariate
ete2.clustering.stats.aF_oneway
ete2.clustering.stats.aF_value
ete2.clustering.stats.abetacf
ete2.clustering.stats.abetai
ete2.clustering.stats.achisqprob
ete2.clustering.stats.achisquare
ete2.clustering.stats.acorrelation
ete2.clustering.stats.acov
ete2.clustering.stats.acovariance
ete2.clustering.stats.acumfreq
ete2.clustering.stats.acumsum
ete2.clustering.stats.adescribe
ete2.clustering.stats.aerfcc
ete2.clustering.stats.afindwithin
ete2.clustering.stats.afprob
ete2.clustering.stats.afriedmanchisquare
ete2.clustering.stats.agammln
ete2.clustering.stats.ageometricmean
ete2.clustering.stats.aglm
ete2.clustering.stats.aharmonicmean
ete2.clustering.stats.ahistogram
ete2.clustering.stats.aitemfreq
ete2.clustering.stats.akendalltau
ete2.clustering.stats.akruskalwallish
ete2.clustering.stats.aks_2samp
ete2.clustering.stats.aksprob
ete2.clustering.stats.akurtosis
ete2.clustering.stats.akurtosistest
ete2.clustering.stats.alincc
ete2.clustering.stats.alinregress
ete2.clustering.stats.amannwhitneyu
ete2.clustering.stats.amasslinregress
ete2.clustering.stats.amean
ete2.clustering.stats.amedian
ete2.clustering.stats.amedianscore
ete2.clustering.stats.amode
ete2.clustering.stats.amoment
ete2.clustering.stats.anormaltest
ete2.clustering.stats.aobrientransform
ete2.clustering.stats.ap2t
ete2.clustering.stats.apaired
ete2.clustering.stats.apearsonr
ete2.clustering.stats.apercentileofscore
ete2.clustering.stats.apointbiserialr
ete2.clustering.stats.arankdata
ete2.clustering.stats.aranksums
ete2.clustering.stats.arelfreq
ete2.clustering.stats.asamplestdev
ete2.clustering.stats.asamplevar
ete2.clustering.stats.ascoreatpercentile
ete2.clustering.stats.asem
ete2.clustering.stats.ashellsort
ete2.clustering.stats.asign
ete2.clustering.stats.asignaltonoise
ete2.clustering.stats.askew
ete2.clustering.stats.askewtest
ete2.clustering.stats.aspearmanr
ete2.clustering.stats.asquare_of_sums
ete2.clustering.stats.ass
ete2.clustering.stats.astdev
ete2.clustering.stats.asterr
ete2.clustering.stats.asum
ete2.clustering.stats.asumdiffsquared
ete2.clustering.stats.asummult
ete2.clustering.stats.athreshold
ete2.clustering.stats.atiecorrect
ete2.clustering.stats.atmax
ete2.clustering.stats.atmean
ete2.clustering.stats.atmin
ete2.clustering.stats.atrim1
ete2.clustering.stats.atrimboth
ete2.clustering.stats.atsem
ete2.clustering.stats.atstdev
ete2.clustering.stats.attest_1samp
ete2.clustering.stats.attest_ind
ete2.clustering.stats.attest_rel
ete2.clustering.stats.atvar
ete2.clustering.stats.avar
ete2.clustering.stats.avariation
ete2.clustering.stats.awilcoxont
ete2.clustering.stats.az
ete2.clustering.stats.azmap
ete2.clustering.stats.azprob
ete2.clustering.stats.azs
ete2.clustering.stats.dices
ete2.clustering.stats.icc
ete2.clustering.stats.lF_oneway
ete2.clustering.stats.lF_value
ete2.clustering.stats.lbetacf
ete2.clustering.stats.lbetai
ete2.clustering.stats.lchisqprob
ete2.clustering.stats.lchisquare
ete2.clustering.stats.lcov
ete2.clustering.stats.lcumfreq
ete2.clustering.stats.lcumsum
ete2.clustering.stats.ldescribe
ete2.clustering.stats.lerfcc
ete2.clustering.stats.lfindwithin
ete2.clustering.stats.lfprob
ete2.clustering.stats.lfriedmanchisquare
ete2.clustering.stats.lgammln
ete2.clustering.stats.lgeometricmean
ete2.clustering.stats.lharmonicmean
ete2.clustering.stats.lhistogram
ete2.clustering.stats.lincr
ete2.clustering.stats.litemfreq
ete2.clustering.stats.lkendalltau
ete2.clustering.stats.lkruskalwallish
ete2.clustering.stats.lks_2samp
ete2.clustering.stats.lksprob
ete2.clustering.stats.lkurtosis
ete2.clustering.stats.llincc
ete2.clustering.stats.llinregress
ete2.clustering.stats.lmannwhitneyu
ete2.clustering.stats.lmean
ete2.clustering.stats.lmedian
ete2.clustering.stats.lmedianscore
ete2.clustering.stats.lmode
ete2.clustering.stats.lmoment
ete2.clustering.stats.lobrientransform
ete2.clustering.stats.lpaired
ete2.clustering.stats.lpearsonr
ete2.clustering.stats.lpercentileofscore
ete2.clustering.stats.lpointbiserialr
ete2.clustering.stats.lrankdata
ete2.clustering.stats.lranksums
ete2.clustering.stats.lrelfreq
ete2.clustering.stats.lsamplestdev
ete2.clustering.stats.lsamplevar
ete2.clustering.stats.lscoreatpercentile
ete2.clustering.stats.lsem
ete2.clustering.stats.lshellsort
ete2.clustering.stats.lskew
ete2.clustering.stats.lspearmanr
ete2.clustering.stats.lsquare_of_sums
ete2.clustering.stats.lss
ete2.clustering.stats.lstdev
ete2.clustering.stats.lsterr
ete2.clustering.stats.lsum
ete2.clustering.stats.lsumdiffsquared
ete2.clustering.stats.lsummult
ete2.clustering.stats.ltiecorrect
ete2.clustering.stats.ltrim1
ete2.clustering.stats.ltrimboth
ete2.clustering.stats.lttest_1samp
ete2.clustering.stats.lttest_ind
ete2.clustering.stats.lttest_rel
ete2.clustering.stats.lvar
ete2.clustering.stats.lvariation
ete2.clustering.stats.lwilcoxont
ete2.clustering.stats.lz
ete2.clustering.stats.lzprob
ete2.clustering.stats.lzs
ete2.clustering.stats.outputfstats
ete2.clustering.stats.outputpairedstats
ete2.clustering.stats.writecc
ete2.parser.fasta.read_fasta
ete2.parser.fasta.write_fasta
ete2.parser.newick.print_supported_formats
ete2.parser.newick.read_newick
ete2.parser.newick.write_newick
ete2.parser.phylip.read_phylip
ete2.parser.phylip.write_phylip
ete2.parser.text_arraytable.read_arraytable
ete2.parser.text_arraytable.write_arraytable
ete2.phylo.reconciliation.get_reconciled_tree
ete2.phylo.spoverlap.get_evol_events_from_leaf
ete2.phylo.spoverlap.get_evol_events_from_root
ete2.treeview.drawer.render_tree
ete2.treeview.drawer.show_tree
ete2.treeview.ete_resources_rc.qCleanupResources
ete2.treeview.ete_resources_rc.qInitResources
ete2.treeview.faces.add_face_to_node
ete2.treeview.layouts.basic
ete2.treeview.layouts.cluster_bars
ete2.treeview.layouts.cluster_cbars
ete2.treeview.layouts.cluster_lines
ete2.treeview.layouts.heatmap
ete2.treeview.layouts.large
ete2.treeview.layouts.phylogeny
All Variables
ete2.ROOTED_PHYLOMES
ete2.__VERSION__
ete2.__package__
ete2.clustering.__VERSION__
ete2.clustering.__package__
ete2.clustering.clustvalidation.__VERSION__
ete2.clustering.clustvalidation.__package__
ete2.clustering.pstat.__VERSION__
ete2.clustering.pstat.__package__
ete2.clustering.stats.F_oneway
ete2.clustering.stats.F_value
ete2.clustering.stats.__VERSION__
ete2.clustering.stats.__package__
ete2.clustering.stats.betacf
ete2.clustering.stats.betai
ete2.clustering.stats.chisqprob
ete2.clustering.stats.chisquare
ete2.clustering.stats.cumfreq
ete2.clustering.stats.cumsum
ete2.clustering.stats.describe
ete2.clustering.stats.erfcc
ete2.clustering.stats.findwithin
ete2.clustering.stats.fprob
ete2.clustering.stats.friedmanchisquare
ete2.clustering.stats.gammln
ete2.clustering.stats.geometricmean
ete2.clustering.stats.harmonicmean
ete2.clustering.stats.histogram
ete2.clustering.stats.incr
ete2.clustering.stats.itemfreq
ete2.clustering.stats.kendalltau
ete2.clustering.stats.kruskalwallish
ete2.clustering.stats.ks_2samp
ete2.clustering.stats.ksprob
ete2.clustering.stats.kurtosis
ete2.clustering.stats.kurtosistest
ete2.clustering.stats.lincc
ete2.clustering.stats.linregress
ete2.clustering.stats.mannwhitneyu
ete2.clustering.stats.mean
ete2.clustering.stats.median
ete2.clustering.stats.medianscore
ete2.clustering.stats.mode
ete2.clustering.stats.moment
ete2.clustering.stats.normaltest
ete2.clustering.stats.obrientransform
ete2.clustering.stats.paired
ete2.clustering.stats.pearsonr
ete2.clustering.stats.percentileofscore
ete2.clustering.stats.pointbiserialr
ete2.clustering.stats.rankdata
ete2.clustering.stats.ranksums
ete2.clustering.stats.relfreq
ete2.clustering.stats.samplestdev
ete2.clustering.stats.samplevar
ete2.clustering.stats.scoreatpercentile
ete2.clustering.stats.sem
ete2.clustering.stats.shellsort
ete2.clustering.stats.signaltonoise
ete2.clustering.stats.skew
ete2.clustering.stats.skewtest
ete2.clustering.stats.spearmanr
ete2.clustering.stats.square_of_sums
ete2.clustering.stats.ss
ete2.clustering.stats.stdev
ete2.clustering.stats.sterr
ete2.clustering.stats.sum
ete2.clustering.stats.sumdiffsquared
ete2.clustering.stats.summult
ete2.clustering.stats.threshold
ete2.clustering.stats.tiecorrect
ete2.clustering.stats.tmean
ete2.clustering.stats.trim1
ete2.clustering.stats.trimboth
ete2.clustering.stats.tsem
ete2.clustering.stats.tstdev
ete2.clustering.stats.ttest_1samp
ete2.clustering.stats.ttest_ind
ete2.clustering.stats.ttest_rel
ete2.clustering.stats.tvar
ete2.clustering.stats.var
ete2.clustering.stats.variation
ete2.clustering.stats.wilcoxont
ete2.clustering.stats.z
ete2.clustering.stats.zprob
ete2.clustering.stats.zs
ete2.coretype.__VERSION__
ete2.coretype.__package__
ete2.parser.__VERSION__
ete2.parser.__package__
ete2.parser.fasta.__VERSION__
ete2.parser.fasta.__package__
ete2.parser.phylip.__VERSION__
ete2.parser.phylip.__package__
ete2.phylo.__VERSION__
ete2.phylo.__package__
ete2.phylo.reconciliation.__VERSION__
ete2.phylo.reconciliation.__package__
ete2.phylomedb.__VERSION__
ete2.phylomedb.__package__
ete2.phylomedb.phylomeDB.ROOTED_PHYLOMES
ete2.phylomedb.species_ages
ete2.treeview.__VERSION__
ete2.treeview.__package__
ete2.treeview.ete_resources_rc.__VERSION__
ete2.treeview.ete_resources_rc.__package__
ete2.treeview.ete_resources_rc.qt_resource_data
ete2.treeview.ete_resources_rc.qt_resource_name
ete2.treeview.ete_resources_rc.qt_resource_struct
ete2.treeview.layouts.__VERSION__
ete2.treeview.layouts.__package__
ete2.treeview.layouts.layout_functions
[hide private]