Everything


All Classes

PyQt4.QtGui.QAbstractItemDelegate.EndEditHint
PyQt4.QtGui.QDialog.DialogCode
PyQt4.QtGui.QFrame.Shadow
PyQt4.QtGui.QFrame.Shape
PyQt4.QtGui.QFrame.StyleMask
PyQt4.QtGui.QGraphicsItem.CacheMode
PyQt4.QtGui.QGraphicsItem.GraphicsItemChange
PyQt4.QtGui.QGraphicsItem.GraphicsItemFlag
PyQt4.QtGui.QGraphicsItem.GraphicsItemFlags
PyQt4.QtGui.QGraphicsPixmapItem.ShapeMode
PyQt4.QtGui.QGraphicsScene.ItemIndexMethod
PyQt4.QtGui.QGraphicsScene.SceneLayer
PyQt4.QtGui.QGraphicsScene.SceneLayers
PyQt4.QtGui.QGraphicsView.CacheMode
PyQt4.QtGui.QGraphicsView.CacheModeFlag
PyQt4.QtGui.QGraphicsView.DragMode
PyQt4.QtGui.QGraphicsView.OptimizationFlag
PyQt4.QtGui.QGraphicsView.OptimizationFlags
PyQt4.QtGui.QGraphicsView.ViewportAnchor
PyQt4.QtGui.QGraphicsView.ViewportUpdateMode
PyQt4.QtGui.QMainWindow.DockOption
PyQt4.QtGui.QMainWindow.DockOptions
PyQt4.QtGui.QPaintDevice.PaintDeviceMetric
PyQt4.QtGui.QWidget.RenderFlag
PyQt4.QtGui.QWidget.RenderFlags
ete2.clustering.clustertree.ClusterNode
ete2.coretype.arraytable.ArrayTable
ete2.coretype.seqgroup.SeqGroup
ete2.coretype.tree.TreeError
ete2.coretype.tree.TreeNode
ete2.parser.newick.NewickError
ete2.phylo.evolevents.EvolEvent
ete2.phylo.phylotree.PhyloNode
ete2.phylomedb.phylomeDB.PhylomeDBConnector
ete2.treeview._about.Ui_About
ete2.treeview._mainwindow.Ui_MainWindow
ete2.treeview._open_newick.Ui_OpenNewick
ete2.treeview._search_dialog.Ui_Dialog
ete2.treeview._show_newick.Ui_Newick
ete2.treeview.drawer.NewickDialog
ete2.treeview.drawer.TreeImageProperties
ete2.treeview.drawer._FaceItem
ete2.treeview.drawer._HighlighterItem
ete2.treeview.drawer._MainApp
ete2.treeview.drawer._MainView
ete2.treeview.drawer._NodeItem
ete2.treeview.drawer._PropModeChooser
ete2.treeview.drawer._PropertiesDialog
ete2.treeview.drawer._SelectorItem
ete2.treeview.drawer._TableItem
ete2.treeview.drawer._TextItem
ete2.treeview.drawer._TreeScene
ete2.treeview.faces.AttrFace
ete2.treeview.faces.Face
ete2.treeview.faces.ImgFace
ete2.treeview.faces.ProfileFace
ete2.treeview.faces.SequenceFace
ete2.treeview.faces.TextFace
ete2.treeview.faces.ValidationFace

All Functions

ete2.clustering.clustvalidation.euclidean_dist
ete2.clustering.clustvalidation.get_avg_profile
ete2.clustering.clustvalidation.get_dunn_index
ete2.clustering.clustvalidation.get_silhouette_width
ete2.clustering.clustvalidation.pearson_dist
ete2.clustering.clustvalidation.safe_mean
ete2.clustering.clustvalidation.safe_mean_vector
ete2.clustering.clustvalidation.spearman_dist
ete2.clustering.clustvalidation.square_euclidean_dist
ete2.coretype.arraytable.get_average_centroid_linkage_dist
ete2.coretype.arraytable.get_centroid_dist
ete2.coretype.arraytable.get_max_vector
ete2.coretype.arraytable.get_mean_vector
ete2.coretype.arraytable.get_median_vector
ete2.coretype.arraytable.get_min_vector
ete2.coretype.arraytable.safe_mean
ete2.coretype.arraytable.safe_mean_vector
ete2.coretype.tree._translate_nodes
ete2.coretype.tree.asETE
ete2.coretype.tree.asRphylo
ete2.parser.fasta._seq2str
ete2.parser.fasta.read_fasta
ete2.parser.fasta.write_fasta
ete2.parser.newick._get_features_string
ete2.parser.newick._parse_extra_features
ete2.parser.newick._read_newick_from_string
ete2.parser.newick._read_node_data
ete2.parser.newick.format_node
ete2.parser.newick.node2internalformat
ete2.parser.newick.node2leafformat
ete2.parser.newick.print_supported_formats
ete2.parser.newick.read_newick
ete2.parser.newick.write_newick
ete2.parser.phylip.read_phylip
ete2.parser.phylip.write_phylip
ete2.parser.text_arraytable.read_arraytable
ete2.parser.text_arraytable.write_arraytable
ete2.phylo.phylotree._parse_species
ete2.phylo.reconciliation._get_expected_topology
ete2.phylo.reconciliation._get_species_on_TOL
ete2.phylo.reconciliation._replace_on_template
ete2.phylo.reconciliation.get_reconciled_tree
ete2.phylo.spoverlap.get_evol_events_from_leaf
ete2.phylo.spoverlap.get_evol_events_from_root
ete2.treeview.drawer.logger
ete2.treeview.drawer.render_tree
ete2.treeview.drawer.show_tree
ete2.treeview.ete_resources_rc.qCleanupResources
ete2.treeview.ete_resources_rc.qInitResources
ete2.treeview.faces.add_face_to_node
ete2.treeview.layouts.basic
ete2.treeview.layouts.cluster_bars
ete2.treeview.layouts.cluster_cbars
ete2.treeview.layouts.cluster_lines
ete2.treeview.layouts.heatmap
ete2.treeview.layouts.large
ete2.treeview.layouts.phylogeny

All Variables

ete2.ROOTED_PHYLOMES
ete2.__VERSION__
ete2.__package__
ete2.clustering.__VERSION__
ete2.clustering.__package__
ete2.clustering.clustertree.__VERSION__
ete2.clustering.clustertree.__package__
ete2.clustering.clustvalidation.__VERSION__
ete2.clustering.clustvalidation.__package__
ete2.coretype.__VERSION__
ete2.coretype.__package__
ete2.coretype.arraytable.__VERSION__
ete2.coretype.arraytable.__package__
ete2.coretype.seqgroup.__VERSION__
ete2.coretype.seqgroup.__package__
ete2.coretype.tree.DEFAULT_COMPACT
ete2.coretype.tree.DEFAULT_SHOWINTERNAL
ete2.coretype.tree.__VERSION__
ete2.coretype.tree.__package__
ete2.parser.__VERSION__
ete2.parser.__package__
ete2.parser.fasta.__VERSION__
ete2.parser.fasta.__package__
ete2.parser.newick.DEFAULT_DIST
ete2.parser.newick.DEFAULT_NAME
ete2.parser.newick.DEFAULT_SUPPORT
ete2.parser.newick.NW_FORMAT
ete2.parser.newick._FLOAT_RE
ete2.parser.newick._ILEGAL_NEWICK_CHARS
ete2.parser.newick._NAME_RE
ete2.parser.newick._NHX_RE
ete2.parser.newick.__VERSION__
ete2.parser.newick.__package__
ete2.parser.phylip.__VERSION__
ete2.parser.phylip.__package__
ete2.parser.text_arraytable.__VERSION__
ete2.parser.text_arraytable.__package__
ete2.phylo.__VERSION__
ete2.phylo.__package__
ete2.phylo.evolevents.__VERSION__
ete2.phylo.evolevents.__package__
ete2.phylo.phylotree.__VERSION__
ete2.phylo.phylotree.__package__
ete2.phylo.reconciliation.__VERSION__
ete2.phylo.reconciliation.__package__
ete2.phylo.spoverlap.__VERSION__
ete2.phylo.spoverlap.__package__
ete2.phylomedb.__VERSION__
ete2.phylomedb.__package__
ete2.phylomedb._humanv1
ete2.phylomedb.phylomeDB.ROOTED_PHYLOMES
ete2.phylomedb.phylomeDB.__VERSION__
ete2.phylomedb.phylomeDB.__package__
ete2.phylomedb.species_ages
ete2.treeview.__VERSION__
ete2.treeview.__package__
ete2.treeview._about.__VERSION__
ete2.treeview._about.__package__
ete2.treeview._mainwindow.__VERSION__
ete2.treeview._mainwindow.__package__
ete2.treeview._open_newick.__VERSION__
ete2.treeview._open_newick.__package__
ete2.treeview._search_dialog.__VERSION__
ete2.treeview._search_dialog.__package__
ete2.treeview._show_newick.__VERSION__
ete2.treeview._show_newick.__package__
ete2.treeview.drawer.DEBUG
ete2.treeview.drawer.USE_GL
ete2.treeview.drawer._MIN_NODE_STYLE
ete2.treeview.drawer._QApp
ete2.treeview.drawer.__VERSION__
ete2.treeview.drawer.__package__
ete2.treeview.ete_resources_rc.__VERSION__
ete2.treeview.ete_resources_rc.__package__
ete2.treeview.ete_resources_rc.qt_resource_data
ete2.treeview.ete_resources_rc.qt_resource_name
ete2.treeview.ete_resources_rc.qt_resource_struct
ete2.treeview.faces.__VERSION__
ete2.treeview.faces.__package__
ete2.treeview.faces.aabgcolors
ete2.treeview.faces.aafgcolors
ete2.treeview.faces.ntbgcolors
ete2.treeview.faces.ntfgcolors
ete2.treeview.layouts.__VERSION__
ete2.treeview.layouts.__package__
ete2.treeview.layouts.layout_functions

[hide private]