hgvs_variant:
c_variant
r_variant
gmn_variant
p_variant
g_variant:
gmn_variant
m_variant:
gmn_variant
n_variant:
gmn_variant
gmn_variant:
accn
:
gmn_type
.
gmn_posedit
c_variant:
accn
:
c
.
c_posedit
p_variant:
accn
:
p
.
p_posedit
r_variant:
accn
:
r
.
r_posedit
any_variant:
accn
:
letter
.
anything
g_edit:
gmn_edit
m_edit:
gmn_edit
n_edit:
gmn_edit
gmn_edit:
g
.
gmn_posedit
c_edit:
c
.
c_posedit
p_edit:
p
.
p_posedit
r_edit:
r
.
r_posedit
hgvs_position:
gmn_hgvs_position
r_hgvs_position
c_hgvs_position
p_hgvs_position
g_hgvs_position:
gmn_hgvs_position
m_hgvs_position:
gmn_hgvs_position
n_hgvs_position:
gmn_hgvs_position
gmn_hgvs_position:
accn
:
gmn_type
.
gmn_interval
c_hgvs_position:
accn
:
c
.
c_interval
p_hgvs_position:
accn
:
p
.
p_interval
r_hgvs_position:
accn
:
r
.
r_interval
g_posedit:
gmn_posedit
m_posedit:
gmn_posedit
n_posedit:
gmn_posedit
gmn_posedit:
gmn_interval
dna_edit
c_posedit:
c_interval
dna_edit
p_posedit:
p_interval
pro_edit
r_posedit:
r_interval
rna_edit
dna_edit_mu:
dna_edit
(
dna_edit
)
dna_edit:
dna_subst
dna_delins
dna_ins
dna_del
dna_dup
dna_subst:
dna
>
dna
dna_delins:
del
num
dna
ins
dna
dna_del:
del
num
dna
dna_ins:
ins
dna
dna_dup:
dup
dna
rna_edit_mu:
rna_edit
(
rna_edit
)
rna_edit:
rna_subst
rna_delins
rna_ins
rna_del
rna_dup
rna_subst:
rna
>
rna
rna_delins:
del
num
rna
ins
rna
rna_del:
del
num
rna
rna_ins:
ins
rna
rna_dup:
dup
rna
pro_edit_mu:
pro_edit
(
pro_edit
)
pro_edit:
pro_subst
pro_delins
pro_ins
pro_del
pro_dup
pro_special
pro_subst:
aat13
aa13_fs
pro_delins:
delins
aat_seq
aa13_fs
pro_del:
del
pro_ins:
ins
aat_seq
aa13_fs
pro_dup:
dup
pro_special:
=
?
0
g_interval:
gmn_interval
m_interval:
gmn_interval
n_interval:
gmn_interval
gmn_interval:
def_gmn_interval
(
def_gmn_interval
)
r_interval:
def_r_interval
(
def_r_interval
)
c_interval:
def_c_interval
(
def_c_interval
)
p_interval:
def_p_interval
(
def_p_interval
)
def_g_interval:
def_gmn_interval
def_m_interval:
def_gmn_interval
def_n_interval:
def_gmn_interval
def_gmn_interval:
gmn_pos
_
gmn_pos
gmn_pos
def_r_interval:
r_pos
_
r_pos
r_pos
def_c_interval:
c_pos
_
c_pos
c_pos
def_p_interval:
p_pos
_
p_pos
p_pos
g_pos:
gmn_pos
m_pos:
gmn_pos
n_pos:
gmn_pos
gmn_pos:
def_gmn_pos
r_pos:
def_r_pos
c_pos:
def_c_pos
p_pos:
def_p_pos
def_g_pos:
def_gmn_pos
def_m_pos:
def_gmn_pos
def_n_pos:
def_gmn_pos
def_gmn_pos:
num
?
def_r_pos:
base
offset
def_c_pos:
base
offset
*
num
offset
def_p_pos:
aa13
num
gmn_type:
g
m
n
dna_seq:
dna
rna_seq:
rna
aat13_seq:
aa3t_seq
aa1t_seq
aa1t_seq:
aa1_seq
aa1_term
aa3t_seq:
aa3_seq
aa3_term
aa13_fs:
fs
fs
aa13_term
fs
aa13_term
num
fs
aa13_term
?
aa13_seq:
aa3_seq
aa1_seq
aa1_seq:
aa1
aa3_seq:
aa3
dna:
A
C
G
T
a
c
g
t
rna:
A
C
G
U
a
c
g
u
aat13:
aa13_term
aa13
aa13:
aa3
aa1
aa1:
A
C
D
E
F
G
H
I
K
L
M
N
P
Q
R
S
T
V
W
Y
aa3:
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
Met
Asn
Pro
Gln
Arg
Ser
Thr
Val
Trp
Tyr
aa13_term:
aa3_term
aa1_term
aa1_term:
X
*
aa3_term:
Ter
base:
snum
?
offset:
snum
?
snum:
pm
num
num:
digit
pm:
-
+
accn:
letter
letterOrDigit
letter
letterOrDigit
_
letterOrDigit
letter
letterOrDigit
_
letterOrDigit
.
digit
Not_Yet_Implemented:
NOT YET IMPLEMENTED