{%- for m in modules %}{% if m.css and m.css|length > 0 -%}{% for css_href in m.css %} {%- endfor %}{% endif %}{% endfor %} {%- for m in modules %}{% if m.js and m.js|length > 0 -%}{% for js_href in m.js %} {%- endfor %}{% endif %}{% endfor %}

Highlight samples:
Regex mode off
Hide samples:
Regex mode off

{{ '

'+report['title']+'

' if report['title'] != None }}

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

Report generated on {{ report['creation_date'] }} based on data in {{ report['analysis_dir'] }}

Report location: {{ report['output_dir'] }}/multiqc_report.html

{% if report['general_stats']['headers']|length > 0 %}

General Statistics

{%- for k, h in report['general_stats']['headers'].iteritems() %} {{ h }} {%- endfor -%} {% for sn, r in report['general_stats']['rows']|dictsort %} {%- for k, h in report['general_stats']['headers'].iteritems() %} {{ r[k] if r[k] else '' }} {%- endfor -%} {%- endfor %}
{{ sn }}
{% endif %} {% for m in modules %}

{{ m.name }}

{{ m.intro if m.intro }} {% for s in m.sections %}

{{ s['name'] }}

{{ s['content'] if s['content'] }} {{ '
' if not loop.last }}
{% endfor %} {{ '
' if not loop.last }} {% endfor %}

MultiQC - Written by Phil Ewels, available on GitHub.

The report uses HighCharts, jQuery, Bootstrap and chroma.js