{%- for m in modules %}{% if m.css and m.css|length > 0 -%}{% for css_href in m.css %} {%- endfor %}{% endif %}{% endfor %} {%- for m in modules %}{% if m.js and m.js|length > 0 -%}{% for js_href in m.js %} {%- endfor %}{% endif %}{% endfor %}


v{{ config.VERSION }}

Toolbox

MultiQC Toolbox

Highlight Samples

Shortcut key for this tool: c

    Regex mode off

    Rename Samples

    Shortcut key for this tool: r

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

      Hide Samples

      Shortcut key for this tool: h

      {% if config.general_stats['rows'] | length > 10 %}

      Warning! This can take a few seconds.

      {% endif %}

        Regex mode off

        Save Config

        Shortcut key for this tool: s

        By default, MultiQC reports auto-save your tool settings to the browser. You can turn that on and off here:

        Auto-save is on

        You can also save a config file to the report directory. Your settings will be applied the next time you open this report, and can be shared with others.

        Download Config File

        If your settings are more general, you can save them to your browser and have them applied to every MultiQC report you open.

        Save General Config

        {{ '

        '+config.title+'

        ' if config.title != None }}

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on {{ config.creation_date }} based on data in {{ config.analysis_dir }}

        Report location: {{ config.output_dir }}/multiqc_report.html

        Welcome! There's a lot you can do here!
        {% if config.general_stats['headers']|length > 0 %}

        General Statistics  

        {%- for k, h in config.general_stats['headers'].items() %} {{ h }} {%- endfor -%} {% for sn, r in config.general_stats['rows']|dictsort %} {%- for k, h in config.general_stats['headers'].items() %} {{ r[k] if r[k] else '' }} {%- endfor -%} {%- endfor %}
        Sample Name
        || {{ sn }}
        {% endif %} {% for m in modules %}

        {{ m.name }}

        {{ m.intro if m.intro }} {% for s in m.sections %}

        {{ s['name'] }}

        {{ s['content'] if s['content'] }} {{ '
        ' if not loop.last }}
        {% endfor %}
        {{ '
        ' if not loop.last }} {% endfor %}

        MultiQC v{{ config.VERSION }} - Written by Phil Ewels, available on GitHub.

        The report uses HighCharts, jQuery, Bootstrap, chroma.js and Bootstrap Tour.